PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g002460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 231aa    MW: 25753.4 Da    PI: 7.1402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g002460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-1076123454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RR+++N++f  L  ll ++   + +K +K++iL  Av+ + +L
  Sopen10g002460.1  76 SKACREKLRREKLNEKFMDLAVLLEPS---RPPKTDKSAILVDAVRVVTQL 123
                       6789**********************9...99**************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.07472123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-675128No hitNo description
PfamPF000101.1E-776123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1176145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1176142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-778129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVLPENTNWL YDYNYEDIVT PDVNFSVSGY SWSMQGFNGS TNASVDIDGS LGESDCLKES  60
GCKKRTRAES CTSSSSKACR EKLRREKLNE KFMDLAVLLE PSRPPKTDKS AILVDAVRVV  120
TQLRGEAQKL KDSNLDLQEK IKELKVEKNE LRDEKQRLKS EKEKLEQQLK TMSAQPSFLP  180
PAMPGAFASP VQAAGTKLVP IISYPGIAMW QFMPPAAIDT SQDHVLRPPV A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-145HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089433.11e-172PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-105ILR3_ARATH; Transcription factor ILR3
TrEMBLK4CXI21e-170K4CXI2_SOLLC; Uncharacterized protein
STRINGSolyc10g006510.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-92bHLH family protein